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<title>Doctoral Dissertations</title>
<copyright>Copyright (c) 2013 University of Connecticut All rights reserved.</copyright>
<link>http://digitalcommons.uconn.edu/dissertations</link>
<description>Recent documents in Doctoral Dissertations</description>
<language>en-us</language>
<lastBuildDate>Fri, 17 May 2013 01:38:24 PDT</lastBuildDate>
<ttl>3600</ttl>


	
		
	

	
		
	







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<title>Investigation of the Role of Inner Membrane Components in Bacillus subtilis Spore Resistance and Germination: Identification of the Germinosome</title>
<link>http://digitalcommons.uconn.edu/dissertations/38</link>
<guid isPermaLink="true">http://digitalcommons.uconn.edu/dissertations/38</guid>
<pubDate>Wed, 15 May 2013 14:04:06 PDT</pubDate>
<description>
	<![CDATA[
	<p><em>Bacillus subtilis</em> cells form spores when they are deprived of nutrients. The spores formed are resistant to many insults including: heat, radiation, enzymes and various chemicals. They are also metabolically inactive and can remain in this state indefinitely. Although dormant, spores rapidly return to life via the process of germination when specific nutrients are returned to their environment. The inner membrane of dormant spores is of central importance in spore biology. Previous studies have shown that the components of the inner membrane of dormant spores have the unique properties of being relatively immobile and compressed. The inner membrane is also relatively impermeable and thus plays a major role in spore resistance and dormancy. It remains unclear how the inner membrane acquires these properties. Moreover, the spore inner membrane contains proteins required for initiating germination including the nutrient germinant receptors (GRs), and the GerD and SpoVA proteins. These proteins seem to act cooperatively but the mechanistic details of the initiation of germination are poorly understood. The first aim of this study was to determine whether the inner membrane phospholipids played specific roles in sporulation and spore properties. The results revealed that changing the phospholipid composition of the<em> B. subtilis </em>inner membrane had little effect on sporulation, and only modest effects on spore germination, wet heat and oxidizing agent sensitivity, and inner membrane permeability. The second aim of this study was to determine how germination proteins are organized in the spore inner membrane using fluorescence microscopy. The results show that the GRs and GerD colocalize primarily to a single cluster in dormant spores, pointing to the existence of a specific germination locus or “germinosome” in the dormant spores’ inner membrane. GRs require all their subunits as well as GerD for cluster formation. Diacylglycerol addition to GerD and GRs’ C subunits is also required for clustering. However, the different GRs cluster independently of each other, and GerD forms clusters in the absence of all the GRs. These data suggest that cooperativity in spore germination is achieved at least in part via pre-positioning necessary germination proteins at a single site in the dormant spore.</p>

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</description>

<author>Keren Griffiths</author>


<category>Bacillus subtilis</category>

<category>bacterial spore</category>

<category>spore germination</category>

<category>fluorescence microscopy</category>

<category>recombinant fusion proteins</category>

<category>membrane lipids</category>

<category>membrane proteins</category>

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<title>Vector-based Peak Current Analysis during Wafer Test of Flip-chip Designs</title>
<link>http://digitalcommons.uconn.edu/dissertations/37</link>
<guid isPermaLink="true">http://digitalcommons.uconn.edu/dissertations/37</guid>
<pubDate>Wed, 15 May 2013 09:22:12 PDT</pubDate>
<description>
	<![CDATA[
	<p>Power consumption has not only become a critical concern in VLSI design phase, but also in test phase. This work focuses on power during test, covering two major research topics: test power analysis and test power reduction. For the analysis part, we firstly demonstrate our basic switching and weighted switching activity analysis in various test phases, pattern set, benchmarks. Then, we propose a layout-aware power analysis flow, with the capability of performing IR-drop analysis, peak current analysis. This flow is integrated in test pattern simulation and is able to monitor power and current behavior across the entire test session, without introducing much CPU run time overhead. It is an universal power analysis methodology that can be applied to various digital designs, technologies, as well as handling low power design features. For the test power reduction part, we proposes a power sensitive scan identification flow to help identify and gate scan cells so as to reduce shift power without introducing much power overhead in capture mode.</p>

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</description>

<author>Wei Zhao</author>


<category>Design-for-test</category>

<category>low-power test</category>

<category>power bumps</category>

<category>flip-chip</category>

<category>test power analysis</category>

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<title>The Geomorphic and Hydrologic Impact of Beaver Dams on Headwater Streams in Northeastern Connecticut and Implications for River Restoration</title>
<link>http://digitalcommons.uconn.edu/dissertations/36</link>
<guid isPermaLink="true">http://digitalcommons.uconn.edu/dissertations/36</guid>
<pubDate>Tue, 30 Apr 2013 09:56:13 PDT</pubDate>
<description>
	<![CDATA[
	<p>The billion-dollar river restoration industry relies primarily on the concept of a free-flowing river to set restoration targets. However, rivers include natural barriers such as beaver dams, wood jams, glacial deposits, and bedrock constrictions. Following European colonization, most of these barriers were removed; some were replaced with far more homogenous ones such as human dams and road crossings. Although the biota intended to benefit from restoration evolved in rivers with natural barriers in place, little is known about the functions of the barriers that have been lost. Beaver dams—the subject of this dissertation—are just one type of the many natural barriers that should be considered by river restoration efforts.</p>
<p>Chapter 2 presents a conceptual model of a river network that includes barriers, generating the fundamental hypothesis that intact and failed barriers create patchy features that store and release water and sediment. In chapter 3, a detailed geomorphic comparison of free-flowing and impounded channels shows that beaver dams decouple stream reaches, where distinct differences in adjacent channel reaches are explained by the presence of beaver dams. Observations of fine sediment deposits in steep reaches downstream of dams and of net sediment losses from old ponds support the hypothesis that beaver ponds store and release sediment.</p>
<p>The hydrologic study of chapter 4 shows that the river channel through a beaver meadow loses water during rain events and subsequently gains water during recession, confirming the hypothesis of storage and release of water. Additional water gains during storm recessions in excess of the volume lost during the events, along with significantly lower runoff rates in the meadow channel during the events, suggest additional storage and subsequent release of upland runoff by the meadow.</p>
<p>Chapter 5 examines summer water temperature at the streambed, which further demonstrates the patchiness generated by the intact and failed beaver dams. A distinct cold pool exists at a scour hole generated by a dam failure, and beaver dams buffer water temperatures upstream. As chapter 6 concludes, this patchiness should be further researched as a target for river restoration efforts where natural dams cannot be directly restored.</p>

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</description>

<author>Denise Burchsted</author>


<category>fluvial geomorphology</category>

<category>river restoration</category>

<category>beaver dams</category>

<category>fluvial discontinuity</category>

<category>river continuum</category>

<category>hydrology</category>

<category>beaver meadow</category>

<category>Castor canadensis</category>

<category>habitat heterogeneity</category>

<category>hierarchical patch dynamics</category>

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<title>Adaptive and Technical Problems in Curriculum Alignment Reform</title>
<link>http://digitalcommons.uconn.edu/dissertations/35</link>
<guid isPermaLink="true">http://digitalcommons.uconn.edu/dissertations/35</guid>
<pubDate>Fri, 26 Apr 2013 14:01:50 PDT</pubDate>
<description>
	<![CDATA[
	<p>This study explored the match between (a) strategies suggested in the research as necessary for a well-honed curriculum alignment reform focused on the instructional core and (b) the strategies actually used by one district, Middlerock, in its implementation of a curriculum alignment reform. The study used interpretive qualitative methods (Caelli, Ray, & Mill, 2003) in order to describe the complex inter-relationships involved among the data sources (e.g., district documents, interview data, and an equity audit). The unit of analysis for this study was the set of strategies identified in the research that were used to address technical problems and adaptive problems by Middlerock personnel during the planning and implementation of the math curriculum alignment reform. Analysis revealed a high match with 87 % of the strategies identified as addressing technical problems and only 8% of the strategies identified as addressing adaptive problems. Results revealed that over the six-year period following the reform, scores remained mostly flat, the district failed to keep pace with gains in math made by comparable districts, wide gaps persisted between student subgroups, and wide gaps persisted between schools in the district. Recommendations include specific steps districts can take to address both the technical and adaptive problems related to curriculum alignment reform focused on the instructional core.</p>

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</description>

<author>Christopher S. Winters</author>


<category>Adaptive</category>

<category>Technical</category>

<category>Reform</category>

<category>Education</category>

<category>Administration</category>

<category>Curriculum</category>

<category>Alignment</category>

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<title>Metal Oxide-based Hybrid Semiconductor Nanowires:Synthesis,Characterization and Chemical Sensing Applications</title>
<link>http://digitalcommons.uconn.edu/dissertations/34</link>
<guid isPermaLink="true">http://digitalcommons.uconn.edu/dissertations/34</guid>
<pubDate>Fri, 26 Apr 2013 13:36:14 PDT</pubDate>
<description>
	<![CDATA[
	<p>Homogeneous (single material component) nanomaterials generally have limited functional characteristics. Fortunately, with the addition of foreign materials component(s) into (onto) homogeneous nanostructures, potential improvement or multiplication of functions could be achieved. On the other hand, very few functional materials can survive and operate at elevated temperature above 700<sup>o</sup>C despite the widespread need in automobiles, industrial reactors, and power plants. Thus it demands new design or discovery of functional nanomaterials with good thermal stability and sustained functions at high temperature. In this study, we look to develop a new class of metal oxide-based hybrid nanowires based on ZnO, SnO<sub>2</sub>, Zn<sub>2</sub>SnO<sub>4</sub>, and (La,Sr)CoO<sub>3</sub>, targeting for designing and understanding new sensing mechanisms and enhancing thermal stability.</p>
<p>Based on Ag<sub>2</sub>O/Zn<sub>2</sub>SnO<sub>4</sub> hybrid nanowire arrays grown by a unique oxide catalyzed one-step vapor phase growth process, a unique reversible response upon oxygen/ethanol ambient was discovered due to the catalytic effect induced by decorated Ag<sub>2</sub>O nanoparticles. This instrumental reversible gas sensing mechanism has been found to be generally applied in various binary metal oxide semiconductor nanowires, such as ZnO/Ag<sub>2</sub>O, SnO<sub>2</sub>/Ag<sub>2</sub>O, and ZnO/SnO<sub>2</sub>/Ag<sub>2</sub>O hybrid systems.</p>
<p><br />To enhance the high temperature stability of ZnO nanowires, perovskite (La,Sr)CoO<sub>3</sub> (LSCO) nanoshells were coated onto their surfaces using solution or vapor phase process on Si and quartz substrates. The layering of LSCO shell onto ZnO nanowires has successfully enabled significant improvement of the chemical and structure stability in both oxidative and reductive atmospheres at high temperature up to 1000<sup>o</sup>C compared to the bare ZnO nanowires. A synergistic stabilizing effect between the comprised ZnO core and LSCO shell is proposed to be responsible to this enhancement. A unique photo-responsive humidity sensing mechanism has been demonstrated based on the ZnO/LSCO core-shell semiconductor nanowire arrays. Furthermore, at elevated temperature up to 800<sup>o</sup>C, improved sensing performance is achieved on the ZnO/LSCO nanowire arrays to various gases including O<sub>2</sub>, CO and SO<sub>x</sub>, compared to ZnO nanowire arrays based sensors.</p>

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</description>

<author>WenJie Andy Cai</author>


<category>Nanotechnology</category>

<category>metal-oxide semiconductor</category>

<category>synthesis</category>

<category>Characterization</category>

<category>Chemical Sensor</category>

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<title>The Other Mother: A Narrative Analysis of the Postpartum Experiences of Nonbirth Lesbian Mothers</title>
<link>http://digitalcommons.uconn.edu/dissertations/33</link>
<guid isPermaLink="true">http://digitalcommons.uconn.edu/dissertations/33</guid>
<pubDate>Thu, 25 Apr 2013 09:01:52 PDT</pubDate>
<description>
	<![CDATA[
	<p>The United States Census (2013) reported that 49 percent of lesbian couples are raising children. Homosexuality has become more accepted in mainstream society. Lesbians and gay men currently have more social and legal rights and protections than at any other time in history. These rights are largely dependent upon the geographical location in which one resides. Although the incidence of lesbian motherhood has increased, the partners of biological mothers are not automatically recognized as parents. Same-sex couples can jointly petition to adopt their partner’s biological children in only 16 American states (including the District of Columbia). Throughout most of the United States, nonbirth lesbian mothers have no legal rights to their children.</p>
<p>The purpose of this study was to develop a metastory of nonbiological lesbian mothers’ postpartum experiences. This author employed narrative analysis utilizing Riessman’s (1993;2008) structural approach to thematic analysis to understand the postpartum experiences of nonbirth lesbian mothers. Ten nonbirth lesbian mothers were interviewed. Each mother shared a unique story of her first year of motherhood. Themes were individually analyzed within each story. The meta-story of the postpartum experiences of non-birth lesbian mothers revealed six overarching themes including: At the mercy of health care providers, Nursing is the major difference between us, Defined by who I am not, Trying to protect my family: The world can take them away, What’s in a name?, and Epilogue: The new normal. Stories remained intact within the portrayal of the metastory illustrating the postpartum experiences of nonbirth lesbian mothers.</p>
<p>This study adds valuable insight to clincial practice. The perspective of the nonbirth lesbian mother is virtually absent in the literature. Nonbirth lesbian mothers have significant health disparities. Health care providers can be instrumental in providing more sensitive care to lesbian mothers and their families. Recommendations are made for clincial practice, education, leadership and research. Nursing has been silent on lesbian, gay, bisexual and transgender (LGBT) health issues. This study compels nurses to take a stand on public issues related to the LGBT community.</p>

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</description>

<author>Michele M. McKelvey</author>


<category>lesbian</category>

<category>gay</category>

<category>homosexual</category>

<category>queer</category>

<category>same-sex parents</category>

<category>maternity</category>

<category>pregnancy</category>

<category>childbirth</category>

<category>birth</category>

<category>antepartum</category>

<category>prenatal</category>

<category>intrapartum</category>

<category>postpartum</category>

<category>motherhood</category>

<category>mothers</category>

<category>nonbirth</category>

<category>nonbiological</category>

<category>stepmothers</category>

<category>co-mothers</category>

<category>social mothers</category>

<category>fertility</category>

<category>infertility</category>

<category>insemination and in vitro fertilization</category>

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<title>Central Office Leadership and Literacy Reform</title>
<link>http://digitalcommons.uconn.edu/dissertations/32</link>
<guid isPermaLink="true">http://digitalcommons.uconn.edu/dissertations/32</guid>
<pubDate>Fri, 19 Apr 2013 15:24:25 PDT</pubDate>
<description>
	<![CDATA[
	<p>This study explored the leadership roles of a school district’s, Memorial Public Schools, central office in literacy reform as related to five areas of a theoretical frame that included:  (a) activities related to bringing a coherent focus on the reform effort within the instructional core; (b) activities related to developing the instructional leadership necessary to carry out the reform effort; (c) activities related to professional learning necessary to build the capacity of teachers to implement the reform; (d) activities related to ensuring that the reform initiative provided equitable educational access for students; and (e) activities related to developing and implementing the policies to support the reform effort.  The study used interpretive qualitative methods (Cresswell, 2006; Caelli, Ray, & Mill, 2003; Merriam et al, 2001) in order to describe the complex inter-relationships involved among the data sources (e.g., interview data, an equity audit, district documents, and a reflective journal). The unit of analysis for this study was the activities of the central office leaders (Superintendent, Deputy Superintendent, Assistant Superintendent of Human Resources, Director of Curriculum, Instruction and Assessment, Director of Elementary Education and PK – 5 Language Arts Consultant) as they related to implementing the literacy reform effort in the five areas of the theoretical frame.  Analysis revealed (a) 45% of the research-based principles were followed, and (b) 55% of the research-based principles were either somewhat followed (25%) or not followed (30%) by Memorial’s central office administrators.  Accordingly, the lack of follow-through on these research principles appeared to have an impact in that the school district did not fully realize the level of change it desired by implementing Readers’ Workshop (Calkins, 2000) in all elementary schools. Results revealed that over the six-year period following the reform, scores on the Developmental Reading Assessment 2 had improved while the Connecticut Mastery Test results remained mostly flat and declined in some schools.  Recommendations include specific steps related to the role of the central office in curriculum alignment reform focused on the instructional core.</p>

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</description>

<author>Anna Cutaia-Leonard</author>


<category>Educational Leadership</category>

<category>Educational Reform</category>

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<title>On-chip Structures and Techniques to Improve the Security, Trustworthiness  and Reliability of Integrated Circuits</title>
<link>http://digitalcommons.uconn.edu/dissertations/31</link>
<guid isPermaLink="true">http://digitalcommons.uconn.edu/dissertations/31</guid>
<pubDate>Fri, 19 Apr 2013 15:24:23 PDT</pubDate>
<description>
	<![CDATA[
	<p>Due to the globalization of the semiconductor design and fabrication process, inte- grated circuits (ICs) are becoming increasingly vulnerable to malicious activities. There are two major problems that impact the security, trustworthiness, and relia- bility of ICs used in military, financial, or other critical applications: (i) Malicious inclusions and alterations, known as hardware Trojans, could be easily inserted into intellectual properties (IPs) or ICs by an untrusted process. These hardware Trojans may leak confidential information to an adversary or potentially disable part or all of an IC at a specific target time in the field. Techniques need to be developed to identify these hardware Trojans to prevent the potential damages. (ii) The number of circuit-related counterfeiting incidents reported by component manufacturers increases significantly over the past few years and recycled ICs contribute major percentages of the total reported counterfeiting incidents. These recycled ICs enter the market when electronic “recyclers” divert scrapped circuit boards away from their designated place of disposal for the purposes of removing and reselling the ICs on those boards. Since these recycled ICs have been used in the field before, the performance of such ICs has been degraded by aging effects and harsh recycling process. In this thesis, to address the above two problems, we developed several light-weight on-chip structures and techniques to improve the security and reliability of ICs. These structures and techniques include (i) a verification-based flow to detect hardware Trojans in IPs, (ii) an on-chip ring oscillator network (RON) acting as power monitors to detect hardware Trojans in ICs, (iii) a novel technique combining the improved RON with transient current to improve the sensitivity of the RON for hardware Trojan detection, (iv) three light-weight sensors recording the usage time to identify recycled ICs, (v) a path- delay fingerprinting flow with zero area overhead to identify recycled ICs, and (vi) two true random number generators (TRNGs) to generate sequences with high randomness, which are widely used for secure data communication and storage. The simulation results and implementation analysis demonstrate the effectiveness of our proposed techniques.</p>

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</description>

<author>xuehui zhang</author>


<category>Hardware Trojan Detection</category>

<category>Recycled ICs Detection</category>

<category>IC Security</category>

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<title>Amateurs: Home, Shipboard, and Public Theatricals in the Nineteenth Century</title>
<link>http://digitalcommons.uconn.edu/dissertations/30</link>
<guid isPermaLink="true">http://digitalcommons.uconn.edu/dissertations/30</guid>
<pubDate>Fri, 19 Apr 2013 11:13:25 PDT</pubDate>
<description>
	<![CDATA[
	<p>Archival Abstract Submitted</p>

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</description>

<author>Mary E. Isbell</author>


<category>Amateur Theatricals</category>

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<title>Fault and Performance Monitoring in Wireless LANs</title>
<link>http://digitalcommons.uconn.edu/dissertations/29</link>
<guid isPermaLink="true">http://digitalcommons.uconn.edu/dissertations/29</guid>
<pubDate>Fri, 19 Apr 2013 10:27:25 PDT</pubDate>
<description>
	<![CDATA[
	<p>Air sniffering is a widely-used and effective technique to monitor access points in WLANs. This technique, however, requires a large number of sniffers and generates a large amount of data. These challenges can be overcome by channel sampling, where each sniffer samples the network traffic by visiting multiple channels periodically. In the first part of the dissertation, we address an important problem in channel sampling, namely, how to select channels for sniffers to reduce monitoring cost. Specifically, we study two channel selection problems. Both of them require that each AP be monitored by at least one sniffer, and in addition, one problem minimizes the maximum number of channels that a sniffer listens to, while the other minimizes the total number of channels that the sniffers listen to. We propose three algorithms, one based on integer program, LP-relaxation, and greedy heuristic, to solve each problem. The performance of the algorithms is evaluated extensively using real-world traces.</p>

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</description>

<author>Xian Chen</author>


<category>fault performance monitoring wlan</category>

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<title>Sexual Empowerment for All? Exploring the Connections between Social Inequality and Expectations of Sexual Pleasure from Adolescence to Young Adulthood</title>
<link>http://digitalcommons.uconn.edu/dissertations/28</link>
<guid isPermaLink="true">http://digitalcommons.uconn.edu/dissertations/28</guid>
<pubDate>Wed, 17 Apr 2013 14:01:20 PDT</pubDate>
<description>
	<![CDATA[
	<p>While the bulk of past quantitative research conceptualizes adolescent sexuality as a risk factor for negative later- life outcomes, this dissertation tests the opposite assumption: that developing a positive sexual self-concept is a normative and integral component of general health and well-being for girls and boys alike. I use data from Waves I, III, and IV of the National Longitudinal Study of Adolescent Health (Add Health) to investigate one positive aspect of sexual self-concept: expectations that sex will be pleasurable. The first goal of this research is to test the sociological determinants of attitudes toward sexual pleasure when respondents were 15 to 19 years old. The second goal is to see how attitudes formed in adolescence affect long-term sexual and contraceptive behavior as well as general health and achievement outcomes when these same respondents were in their 20s and early 30s.</p>
<p>Multivariate analyses show differential influences of racial background and socioeconomic status by gender. For girls, positive expectations of sexual pleasure are stratified along racial lines. For boys, positive expectations of sexual pleasure are stratified not by race, but by traditional social capital measures. Parental education level, high school grade point average, and attendance at a private school are all positively associated with expectations of sexual pleasure for boys.</p>
<p>In terms of long-term effects, I find distinct differences between the effects of adolescent sexual behavior and sexual pleasure attitudes for both men and women. Estimates from generalized linear models show that expectations of sexual pleasure do not have negative effects on contraceptive use and sexual behavior in adulthood. I also find that sexual pleasure attitudes in adolescence have significant positive effects on other long-term outcomes (such as educational attainment and personal income), holding traditional control variables constant. These findings can be used encourage parents, teachers, and policymakers that a positive, shame-free approach to adolescent sexuality is not harmful, and is even beneficial to a child’s long-term health and well-being.</p>

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</description>

<author>Stacy A. Missari</author>


<category>gender; sexuality; feminist theory; intersectionality; quantitative methods</category>

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<title>The Epistemology of Intuition and Seemings</title>
<link>http://digitalcommons.uconn.edu/dissertations/27</link>
<guid isPermaLink="true">http://digitalcommons.uconn.edu/dissertations/27</guid>
<pubDate>Mon, 15 Apr 2013 13:06:50 PDT</pubDate>
<description>
	<![CDATA[
	<p>Rationalism is the view that intuitions are a defeasible source of non-inferential justification. The first part of this dissertation is an exposition and defense of this view. I begin with an account of what it is for a proposition to seem true, arguing that seemings are a sui generis, irreducible propositional attitude that is importantly related to, yet distinct from, perceptual, memorial, and introspective experiences. I then defend the view that intuitions are seemings of a certain sort. I argue that seemings generally, and thus intuitions in particular, are a defeasible source of non-inferential justification, and I defend the epistemic value of seemings and intuitions against various objections. The second part of my dissertation assesses a familiar argument in defense of the epistemic value of intuitions. Roughly, the argument goes like this: “to have an argument which gives us a reason to reject the epistemic value of intuitions, one must rely on intuitions as though they had epistemic value. Thus, such arguments are self-defeating and are therefore unable to give us a reason to reject the epistemic value of intuitions.” Against this, I argue that some self-defeating arguments can give us a reason to not believe in the epistemic value of intuitions. I conclude my dissertation by addressing certain puzzles raised by the phenomenon of self-defeating arguments.</p>

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</description>

<author>Paul Silva Jr.</author>


<category>Philosophy</category>

<category>Epistemology</category>

<category>Intuition</category>

<category>Seemings</category>

<category>Justification</category>

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<title>Electronic structure calculations and properties of alkaline-earth molecular ions</title>
<link>http://digitalcommons.uconn.edu/dissertations/26</link>
<guid isPermaLink="true">http://digitalcommons.uconn.edu/dissertations/26</guid>
<pubDate>Thu, 11 Apr 2013 13:06:30 PDT</pubDate>
<description>
	<![CDATA[
	<p>Alkaline-earth dimers are now been used, as new grounds for, testing fundamental physics laws, precision measurements and quantum computation. As a starting point for such experiments, one needs a very good knowledge of the electronic structure, energetics and long-range behavior of these molecular ions. We perform accurate <em>ab initio</em> calculations for the ground and low-lying excited states of Be<sub>2</sub><sup>+</sup>, Mg<sub>2</sub><sup>+</sup>, Ca<sub>2</sub><sup>+ </sup>and Sr<sub>2</sub><sup>+ </sup>molecular ions. We have also calculated the spectroscopic constants, electronic transition dipole moments, polarizabilities and long-range dispersion coefficients for the various alkaline-earth ionic dimers. We have extended our calculations to study heteronuclear species of alkaline-earth molecular ions, like BeCa<sup>+</sup>, and also mixed alkali alkaline-earth species like NaCa<sup>+</sup>. We calculated photoassociation (PA) pathways for formation of cold molecular ions and also studied corrections to the Born-Oppenheimer Hamiltonian: non-adiabatic couplings and hyperfine structure due to nuclear spins and electric quadrupoles. We believe, this work would lay foundation, not only for new experiments in ultracold physics and chemistry, but would also provide valuable starting point for theoretical calculations involving low temperature scattering and resonant charge transfer.</p>

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</description>

<author>Sandipan Banerjee</author>


<category>Ab initio</category>

<category>Molecular ions</category>

<category>Gold nanoclusters</category>

<category>QM/MM</category>

<category>DFT</category>

<category>Electronic structure</category>

<category>Potential energy curves</category>

<category>Hyperfine structure</category>

<category>Non-adiabatic corrections</category>

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<title>Unhappily Ever After: The Troubled Conclusions of Postbellum Women Writers</title>
<link>http://digitalcommons.uconn.edu/dissertations/25</link>
<guid isPermaLink="true">http://digitalcommons.uconn.edu/dissertations/25</guid>
<pubDate>Wed, 10 Apr 2013 07:06:01 PDT</pubDate>
<description>
	<![CDATA[
	<p>My dissertation argues for a reconsideration of nineteenth-century narrative endings as significant moments of literary transition from sentimentalism to realism, particularly in regards to depictions of marriage. Popular women writers like Rebecca Harding Davis, Elizabeth Stuart Phelps, Louisa May Alcott, and Mary Wilkins Freeman use the body of their works to advocate for a woman’s right to pursue her dreams outside the domestic space while their conclusions depict women sacrificing themselves for the sake of husbands, children, and home life. I maintain that these writers use their seemingly contradictory endings to undermine the possibility of narrative closure and challenge the formulaic plotlines of earlier nineteenth-century women’s fiction. Transitioning from the more structured conventions of sentimentalism into the uncertainty of realism, they utilize a narrative technique I call “troubled conclusions” to functionally end the texts while still allowing the narrative tensions to remain unresolved. In so doing, Davis, Phelps, Alcott, and Freeman force readers to question their endings and continue considering the complicated issues they fail to resolve, subtly suggesting that these issues are perhaps irresolvable.</p>

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</description>

<author>Emily G. Dolan</author>


<category>19th Century literature</category>

<category>American literature</category>

<category>Women writers</category>

<category>Narrative Theory</category>

<category>Publishing history</category>

<category>Sentimentalism</category>

<category>Realism</category>

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<title>Adapting Shahrazad’s Odyssey: The Female Wanderer and Storyteller in Victorian and Contemporary Middle Eastern Literature</title>
<link>http://digitalcommons.uconn.edu/dissertations/24</link>
<guid isPermaLink="true">http://digitalcommons.uconn.edu/dissertations/24</guid>
<pubDate>Wed, 10 Apr 2013 06:31:05 PDT</pubDate>
<description>
	<![CDATA[
	<p>This project traces connections between the concepts of travel and rewriting in women’s fiction in nineteenth-century Victorian literature and in Anglophone Middle Eastern writing. This study is the first to discover a strong link between travelling texts and the travelling women in fiction and to analyze the ways in which the travelling woman is molded by her previous exposure to stories. In this comparative project, I argue that travel can be understood as a metaphor for rewriting and the female wanderer as the reworked adaptation of Odysseus and Shahrazad figures and that the concept of adaptation can be read as a metatextual travel between past and present, Victorian and contemporary, nostalgia and progress. Moreover, I explore the ways in which rewriting empowers women writers who are traditionally considered outside of both the male canon and the travel experience in general. The first part focuses on two Victorian women writers, Olive Schreiner and Christina G. Rossetti, and their feminist responses to the Victorian admiration for ancient Greek culture. The figure of the fictional voyager within the Victorian tradition of masculine, colonial adventure stories merges with the protagonist of the female novel of development in <em>The Story of an African Farm </em>(1883)<em> </em>and <em>Speaking Likenesses </em>(1874). The second part discusses two Anglophone Middle Eastern novels, Ahdaf Soueif’s <em>The Map of Love</em> (1999) and Güneli Gün’s <em>On the Road to Baghdad</em> (1991), which fuse the Western tradition of the Homeric epic with the story-telling tradition of <em>One Thousand and One Nights</em>.</p>

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</description>

<author>Eda Dedebas Dundar</author>


<category>travel</category>

<category>adaptation</category>

<category>Homer</category>

<category>1001 Nights</category>

<category>female traveler</category>

</item>






<item>
<title>Investigating Gp96 Biology and its Macrophage-Intrinsic Role in Colitis-Associated Colon Tumorigenesis</title>
<link>http://digitalcommons.uconn.edu/dissertations/23</link>
<guid isPermaLink="true">http://digitalcommons.uconn.edu/dissertations/23</guid>
<pubDate>Tue, 09 Apr 2013 09:26:38 PDT</pubDate>
<description>
	<![CDATA[
	<p>Gp96, a mammalian endoplasmic reticulum chaperone, is required for expression of multiple Toll-Like Receptors (TLRs) and integrins. This heat shock protein is upregulated in cancer and tumor associated macrophages, and it is known to cross-present tumor antigens. A better understanding of gp96 biology will aid the design of cancer drugs, as gp96 is a possible target. To study this molecule, we investigated an orthologous system in <em>Drosophila</em>. A BLAST search identified <em>Drosophila</em> gp93, an uncharacterized molecule, with 74% amino acid homology. Gp93 was found to rescue gp96 client expression in a gp96-deficient murine pre-B cell line. It was further demonstrated that CNPYb is a TLR-specific cochaperone of gp93. Therefore, we have not only identified gp93 as the <em>Drosophila</em> ortholog of gp96, but we have also established a simpler system by which to further study gp96 biochemistry.</p>
<p>Since gp96, TLRs, and macrophages have all been implicated in cancer, we decided to further explore their role in tumorigenesis. We therefore utilized a macrophage-specific gp96 knockout (KO) mouse to study the role of macrophage-derived gp96. Both wild type and KO mice were treated with either Dextran Sulfate Sodium (DSS) alone to induce colitis, or Azoxymethane plus DSS to induce inflammation-associated colon tumorigenesis. KO mice are protected from both diseases, suggesting that macrophage-intrinsic gp96 plays a promoting role. Mechanistically, gp96 induces IL-17, IL-23, TNFα, Wnt signaling, and β–catenin mutations while reducing CD4<sup>+</sup>IFNγ<sup>+</sup> cells. Our data thus help to explain the manner in which gp96 promotes cancer, thus identifying possible targets for therapeutic development.</p>

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</description>

<author>Crystal Morales</author>


<category>gp96/grp94</category>

<category>gp93</category>

<category>chaperone</category>

<category>TLR</category>

<category>integrin</category>

<category>CNPY</category>

<category>colitis</category>

<category>macrophage</category>

<category>inflammation-induced colon tumorigenesis</category>

<category>Drosophila</category>

</item>






<item>
<title>Artificial Immune System for Associative Classification</title>
<link>http://digitalcommons.uconn.edu/dissertations/22</link>
<guid isPermaLink="true">http://digitalcommons.uconn.edu/dissertations/22</guid>
<pubDate>Thu, 28 Mar 2013 13:56:22 PDT</pubDate>
<description>
	<![CDATA[
	<p>When attempting to build complex systems, systems that resemble the intelligence or efficiency found in natural systems, it is not surprising that computer scientists have often turned to biological systems for inspiration in solving complex computational problems. One of the most sophisticated biological systems is the Natural Immune System (NIS). NIS is a distributed, multi-layered, adaptive, dynamic, and life-long learning system. Meanwhile, the Artificial Immune System (AIS) is a computational system inspired by the principles and processes of the NIS. The field of AIS has obtained some degree of success as a branch of computational intelligence since its emergence in the 1990s. There have been several successful applications of AIS in computer security, optimization, anomaly detection, and data mining. Data mining is the process of discovering patterns from large data sets. One of the branches of data mining is Associative Classification (AC). AC algorithms integrate association rules discovery and classification to build a classifier from a training data for predicting the class of unforeseen test data. Meanwhile, traditional Associative Classification algorithms typically search for all possible association rules to find a representative subset of those rules. Since the search space of such rules may grow exponentially as the support threshold decreases, the rules discovery process can be computationally expensive. One effective way to tackle this problem is to directly find a set of high-stakes association rules that potentially builds a highly accurate classifier.</p>
<p>To achieve this efficiently, this work integrates two novel algorithms, namely: ML-DS (Multi-Level Deterministic Sampling) and AC-CS (Associative Classification with Clonal Selection). AC-CS is a deterministic sampling algorithm that attempts to improve accuracy without sacrificing the running time. It begins with a large sample deterministically selected from the dataset and then proceeds in levels. First, it divides the remaining data into disjoint groups of equal size. Each group in turn is recursively divided into smaller disjoint subgroups of equal size. A distance measure is then determined for each subgroup against the original group. Subgroups with minimum distance are retained while others are discarded. The process is repeated until the size of the remaining transactions is equal to a desired sampling threshold. We employ this sampling strategy to pick a representative training sample to begin with. AC-CS is an AC algorithm inspired by the clonal selection algorithm. The algorithm begins with a small population of frequent single item rules. These rules then go through a process of cloning, mutating, and pruning for several generations. Only high quality rules are added to the memory pool. These rules are applied in turn to classify a testing datasets. In a nutshell, upon picking a representative sample of the original data, the approach proceeds in an evolutionary fashion to populate only rules that are likely to yield good classification accuracy. Empirical results on several real datasets show that the approach generates dramatically less rules than traditional AC algorithms.In general, the accuracy of AC-CS with sampling is very close to that without sampling. However, there is a clear reduction in the running time on all datasets. This indicates that our sampling approach is very effective in producing a good representative sample of the original full dataset. In addition, the proposed approach is significantly more efficient than traditional AC algorithms while achieving a competitive accuracy.</p>

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</description>

<author>Samir Elsayed</author>


<category>Artificial Immune System</category>

</item>






<item>
<title>Three Essays in Fisheries and Aquaculture Economics</title>
<link>http://digitalcommons.uconn.edu/dissertations/21</link>
<guid isPermaLink="true">http://digitalcommons.uconn.edu/dissertations/21</guid>
<pubDate>Wed, 27 Mar 2013 12:05:57 PDT</pubDate>
<description>
	<![CDATA[
	<p>Solutions to the many capture fisheries and aquaculture problems include (but not limited) to co-management, ecosystem-based management, marine protected areas and sustainable aquaculture practices (CRC, 2006). Essay one used dataset from 2005 and 2009 surveys, the study stills shows the efficacy of co-management in managing resource conflicts and improve collaboration over fisheries in Indonesia. This finding strengthens the Worldwide Collaborative Research Project on Fisheries Co-management (WCRPFC) phase I finding that co-management is a potential option in managing conflicts between resource users who have the exclusive use rights and those who are excluded (Nielsen et al., 2004). Essay two determined the optimal MPA size using biological data from the Eastern part of Indonesia. The bioeconomic model finds that the optimal MPA size is 37.77 percent of total fishery area to be closed as no-take zone. In this model, the open area of fishery is managed by a social planner who applies traditional management measure called ‘sasi”. It turns out that a combination of “sasi” and 37.77 % of MPA size has the highest cumulative profits compare to “sasi” only or open access. Essay three finds that IMTA technology is potentially able to reduce the cost of salmon aquaculture. Based on laboratory data, the analysis investigates the economic consequences of growing mussels on salmon farm through reducing the number of lice treatments needed. This study finds that indeed growing mussels on salmon farming could impact the economic return positively although the percentage is not very high.</p>

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</description>

<author>Umi Muawanah et al.</author>


<category>Natural Resource Economics</category>

<category>Fisheries management and governance</category>

<category>Bioeconomic</category>

<category>Aquaculture</category>

</item>






<item>
<title>Argument Ellipsis, Classifier Phrases, and the DP Parameter</title>
<link>http://digitalcommons.uconn.edu/dissertations/20</link>
<guid isPermaLink="true">http://digitalcommons.uconn.edu/dissertations/20</guid>
<pubDate>Thu, 21 Mar 2013 13:11:19 PDT</pubDate>
<description>
	<![CDATA[
	<p>This thesis investigates two theoretical consequences of a point of typological variation, namely, the presence/lack of Determiner Phrase (DP) in a language. I argue that the availability of Argument Ellipsis (AE) is directly tied to the lack of DP in a given language, and that (numeral) Classifier Phrases (CLP) and DP cannot co-occur in the same language.</p>
<p>In chapter 2, building on Bošković’s (2008a, 2012) claim that languages without articles lack DP, I investigate the status of DP in Mandarin Chinese (MC). I examine previous literature and show that claims regarding the existence of DP in MC are not supported and provide evidence that the DP projection is indeed missing from the nominal structure of MC. In chapter 3, I examine the null argument paradigm in MC and argue that the phenomenon of AE, in which the argument is elided in the PF component, is independently attested in MC. In chapter 4, I propose a new theory of AE, where the licensing condition on AE is tied to the absence of DP. In other words, AE may only occur in languages without the DP projection. I propose that the lack of DP makes VP (rather than <em>v</em>P) a phase in these languages. As a consequence, the direct object of the verb, which is the complement of a phase head, may be elided in the PF component, resulting in the phenomenon of AE. In chapter 5, I explore the second consequence of the lack of DP: its relation with numeral classifiers. Examining various languages, I establish a correlation between the existence of a numeral Classifier (CL) system and the lack of DP, which states that numeral CLPs do not co-occur with DP in the same language. I also examine CLP systems in Japanese and MC as case studies to capture certain differences in their nominal domains.</p>

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</description>

<author>Hsu-Te Cheng</author>


<category>argument ellipsis</category>

<category>classifier phrase</category>

<category>noun phrase</category>

<category>DP parameter</category>

<category>phase</category>

<category>ellipsis</category>

</item>






<item>
<title>“Must Be the Season of the Witch”: The Repression and Harassment of Rock and Folk Music during the Long Sixties</title>
<link>http://digitalcommons.uconn.edu/dissertations/19</link>
<guid isPermaLink="true">http://digitalcommons.uconn.edu/dissertations/19</guid>
<pubDate>Tue, 19 Mar 2013 11:41:14 PDT</pubDate>
<description>
	<![CDATA[
	<p>Between the mid-1960s and early-1970s, the genres of folk and rock music were often culturally subversive forces that, at times, supported such countercultural mores as illegal drug use, obscenity, and a hedonistic sexuality which offended some governmental agencies and law enforcement authorities in the United States. Although the countercultural subversion frequently attributed to such music was neither the same as nor necessarily inclusive with revolutionary, leftist political ideologies and movements, such music commonly provided the soundtrack and inspiration for various counter-hegemonic political groups as the antiwar movement, the Youth International Party, the Black Panther Party, and the Weather Underground (all of which challenged government authorities which they condemned as imperialist, racist, and oppressive). Consequently, a variety of officials, including FBI agents, the U.S. Military, and local law enforcement officers, including municipal narcotics and vice squads, instituted various forms of repression or harassment against certain musical performers, promoters, or concertgoers. Frequently working as independent actors or bureaus, these political officials and law enforcement agents imposed varying degrees of repression or harassment upon musicians, depending on the degree to which they felt threatened. Targeted by such acts, musicians sometimes witnessed a deleterious effect on their emotional state, careers, and even the general direction of the music industry. Others, however, seemed little affected by police harassment or political repression, suggesting that the thought of dealing with law enforcement authorities did not completely deter all musicians from writing, recording, or performing whatever they wished.</p>

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</description>

<author>Daniel A. Simmons</author>


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